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Pathogen Metagenomic Sequencing

PMseq™ Pathogen Metagenomic Sequencing

Based on metagenomics, PMseq™ detects more than 36,000 types of pathogens, including bacteria, fungi, viruses, and parasites, in a single next-generation sequencing (NGS) test, along with representative drug resistance and virulence genes, without bias. It significantly increases the positive rate of infection diagnosis, helps enable more targeted antibiotic use, and supports precise diagnosis and management of infections.

Recommended Populations

Patients with Complex or Unclear Infections

Infection cases that remain unresolved after conventional testing.

Patients with Severe Infections

Critically ill patients who need rapid detection and broad coverage.

Immunocompromised Patients

Patients with weakened immune systems who are at high risk of complex infections.

Detection Scope

Detects more than 36,000 pathogens and representative resistance and virulence genes in a single test, and supports analysis of human chromosomal copy number variations (CNVs).

16,343

Bacteria

Including 226 Mycobacteria and 179 Mycoplasma / Chlamydia / Rickettsia.

2,431

Fungi

Comprehensive fungal genome database.

16,679

Viruses

Including 11,545 DNA viruses and 5,134 RNA viruses.

718

Parasites

Broad coverage of parasitic pathogens.

33

Drug Resistance Genes

Detects 67 types of antibiotic-resistant bacteria, including genes/sites such as CTX-M, KPC, OXA, MecA, NDM, and 23S rRNA.

281

Virulence Genes

Including rmpA, rmpA2, iutA, hly, ctxA/ctxB, and others.

Sample Types

Peripheral blood & plasma CSF & brain tissue Respiratory tract: BAL, sputum, swab, aspirate Pleural, ascitic, and joint fluid Tissue, biopsy, paraffin-embedded tissue Urine, swab, secretions

Why Choose PMseq™ Pathogen Metagenomic Sequencing

1

High Data Output

High-throughput sequencing technology increases data output, ensuring highly sensitive pathogen detection and strong support for precise diagnosis of complex infections.

2

Comprehensive Coverage

Detects 36,000 pathogens in a single test, including drug resistance and virulence genes (e.g., Mycobacterium tuberculosis resistance mutations), for full-spectrum pathogen analysis in complex infections.

3

Precision Processing

Targeted sample pretreatment and an optimized workflow improve test sensitivity, providing accurate and reliable results for clinical decisions.

4

Clinical-Grade Database

Supported by a clinically standardized database and intelligent algorithms, ensuring precise reports to guide diagnosis and management of complex infections.

5

Fully Certified

The end-to-end process, from nucleic acid extraction to analysis software, meets clinical certification requirements, ensuring result quality, authority, and credibility.

6

Reliable Performance

Standardized quality management ensures stable and consistent testing. Years of passing NHC mNGS external quality assessments validate accuracy and reliability.

Testing Service Process

1

Physician Orders Test

The physician orders the test based on the clinical presentation.

2

Sample Collection

Clinical samples are collected according to specimen-type guidelines.

3

Shipment & Analysis

Samples are sent to the laboratory for analysis.

4

Results to Physician

The report is provided to the treating physician.

Turnaround Time (TAT)

≤7 Working Days Results within a maximum of 7 working days
TechnologyNext-Generation Sequencing (NGS): Metagenomik
TAT≤7 Working Days

Clinical Presentation & Sample Types

Clinical Presentation
Sample Types
Bloodstream infection, sepsis
Peripheral blood
Encephalitis, meningitis, myelitis
Cerebrospinal fluid, brain abscess aspirate, spinal fluid, brain tissue
Upper respiratory tract infection
Nasopharyngeal swab / oropharyngeal swab
Lower respiratory tract infection
Protected brush > bronchoalveolar lavage (BAL) fluid, lung tissue > endotracheal aspirate > deep sputum
Pleuritis
Pleural fluid, ascites
Joint infection, prosthetic infection
Synovial fluid, prosthesis sonicate fluid
Ocular infection
Vitreous humor, aqueous humor, corneal tissue, ocular secretions
Skin and soft tissue infection
Wound swab, wound tissue (at the boundary between normal and necrotic tissue), abscess
Urinary tract infection
Urine (first-morning urine), bladder aspirate
Genitourinary infection
Urethral / vaginal / cervical / endometrial secretions, pelvic abscess; prostatic fluid, semen, ulcer secretions, etc.
Deep and superficial abscesses
Purulent fluid, aspirate
Tissue infection
Fresh tissue, biopsy tissue, paraffin-embedded tissue
Fever of unknown origin (FUO)
Peripheral blood + sample from the suspected focus
Patients unable to tolerate invasive surgical procedures
Peripheral blood

Improve the Accuracy of Infection Diagnosis and Treatment with PMseq™